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    muscle M-line assembly protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841817, updated on 18-Sep-2024

    Summary

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    Official Full Name
    muscle M-line assembly protein
    Primary source
    TAIR:AT1G53800
    Locus tag
    AT1G53800
    See related
    Araport:AT1G53800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18A20.4; T18A20_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (20081644..20084551)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory complex ATPase Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036106.1
    NM_001333611.1
    NM_104257.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    muscle M-line assembly protein
    NP_001031183.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_564641.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20081644..20084551
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333610.1 → NP_001322869.1  muscle M-line assembly protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJP4, B9DHC9
      Conserved Domains (1) summary
      pfam07460
      Location:113 → 141
      NUMOD3; NUMOD3 motif (2 copies)

    2. NM_104257.3 → NP_564641.2  muscle M-line assembly protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564641.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLB7, A0A5S9WLQ1, F4HTD0
      Conserved Domains (1) summary
      pfam07460
      Location:109 → 137
      NUMOD3; NUMOD3 motif (2 copies)

    3. NM_001036106.1 → NP_001031183.1  muscle M-line assembly protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031183.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WJP4, B9DHC9
      Conserved Domains (1) summary
      pfam07460
      Location:113 → 141
      NUMOD3; NUMOD3 motif (2 copies)

    4. NM_001333611.1 → NP_001322870.1  muscle M-line assembly protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8L7Y2, Q945M0
    Nucleotide Protein
    Heading Accession and Version

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