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    Surfeit locus 1 cytochrome c oxidase biogenesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841272, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Surfeit locus 1 cytochrome c oxidase biogenesis protein
    Primary source
    TAIR:AT1G48510
    Locus tag
    AT1G48510
    See related
    Araport:AT1G48510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N15.12; T1N15_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (17934746..17936946)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene jasmonate-zim-domain protein 4 Neighboring gene GLU-ADT subunit B Neighboring gene proteasome inhibitor-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana SURFEIT1-like genes link mitochondrial function to early plant development and hormonal growth responses. Gras DE, et al. Plant J, 2020 Jul. PMID 32248588
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333339.1
    NM_103747.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within seedling development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Surfeit locus 1 cytochrome c oxidase biogenesis protein
    NP_001319175.1
    • Surfeit locus 1 cytochrome c oxidase biogenesis protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: Surfeit locus 1 cytochrome c oxidase biogenesis protein (TAIR:AT3G17910.1).
    NP_175284.2
    • Surfeit locus 1 cytochrome c oxidase biogenesis protein; CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: Surfeit locus 1 cytochrome c oxidase biogenesis protein (TAIR:AT3G17910.1); Has 339 Blast hits to 337 proteins in 81 species: Archae - 0; Bacteria - 17; Metazoa - 64; Fungi - 36; Plants - 44; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17934746..17936946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333340.1 → NP_001321913.1  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNR9, A0A1P8ASC2

    2. NM_001333341.1 → NP_001321912.1  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASC1

    3. NM_001333339.1 → NP_001319175.1  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WPY3, A0A654EGT7, F4HYG9
      Conserved Domains (1) summary
      cl01321
      Location:109 → 264
      SURF1; SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring ...

    4. NM_103747.2 → NP_175284.2  Surfeit locus 1 cytochrome c oxidase biogenesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175284.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HYG8, Q9LP74
      UniProtKB/TrEMBL
      A0A5S9WPY3
      Conserved Domains (1) summary
      pfam02104
      Location:89 → 295
      SURF1; SURF1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LP74.2

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