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    Cytochrome c oxidase subunit Vc family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819351, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cytochrome c oxidase subunit Vc family protein
    Primary source
    TAIR:AT2G47380
    Locus tag
    AT2G47380
    See related
    Araport:AT2G47380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8I13.22
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (19440923..19442053)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene ncRNA Neighboring gene Prolyl oligopeptidase family protein Neighboring gene ncRNA Neighboring gene CP12 domain-containing protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The leader intron of Arabidopsis thaliana genes encoding cytochrome c oxidase subunit 5c promotes high-level expression by increasing transcript abundance and translation efficiency. Curi GC, et al. J Exp Bot, 2005 Sep. PMID 16061502
    2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. essential role of the intron present in the 5'-non-coding region of all known COX5c genes in directing the expression of these genes in plants.
      Title: The leader intron of Arabidopsis thaliana genes encoding cytochrome c oxidase subunit 5c promotes high-level expression by increasing transcript abundance and translation efficiency.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001337259.1
    NM_130306.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    part_of respiratory chain complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Cytochrome c oxidase subunit Vc family protein
    NP_182260.1
    • Cytochrome c oxidase subunit Vc family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase subunit Vc (InterPro:IPR008432); BEST Arabidopsis thaliana protein match is: Cytochrome c oxidase subunit Vc family protein (TAIR:AT5G61310.4); Has 93 Blast hits to 93 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19440923..19442053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130306.3 → NP_182260.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182260.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22912
      UniProtKB/TrEMBL
      A0A178VNW9, A0A5S9X7U3
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional

    2. NM_001337259.1 → NP_001324866.1  Cytochrome c oxidase subunit Vc family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22912
      UniProtKB/TrEMBL
      A0A178VNW9, A0A5S9X7U3
      Conserved Domains (1) summary
      PLN03155
      Location:1 → 63
      PLN03155; cytochrome c oxidase subunit 5C; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22912.1

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