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    ASL15 Lateral organ boundaries (LOB) domain family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818844, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ASL15
    Official Full Name
    Lateral organ boundaries (LOB) domain family protein
    Primary source
    TAIR:AT2G42440
    Locus tag
    AT2G42440
    See related
    Araport:AT2G42440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASYMMETRIC LEAVES 2-like 15; LBD17; LOB domain-containing protein 17; MHK10.16; MHK10_16
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    Genomic context

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    See ASL15 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (17668701..17669836, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene lateral organ boundaries-domain 16 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene MATH domain/coiled-coil protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LATERAL ORGAN BOUNDARIES DOMAIN transcription factors direct callus formation in Arabidopsis regeneration. Fan M, et al. Cell Res, 2012 Jul. PMID 22508267, Free PMC Article
    2. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within callus formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Lateral organ boundaries (LOB) domain family protein
    NP_850370.4
    • Lateral organ boundaries (LOB) domain family protein; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: lateral organ boundaries-domain 29 (TAIR:AT3G58190.1); Has 862 Blast hits to 857 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 862; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17668701..17669836 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180039.5 → NP_850370.4  Lateral organ boundaries (LOB) domain family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850370.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG69, Q8S9M2, Q9SLB6
      UniProtKB/TrEMBL
      A0A178W0K1, A0A5S9X6C5
      Conserved Domains (1) summary
      pfam03195
      Location:7 → 106
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SLB6.1

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