U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DNF RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821448, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    DNF
    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT3G19140
    Locus tag
    AT3G19140
    See related
    Araport:AT3G19140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DAY NEUTRAL FLOWERING
    Summary
    DAY NEUTRAL FLOWERING (DNF) is a membrane-bound E3 ligase involved in the regulation of flowering time in Arabidopsis. It negetively regulate the early flowering under Short Day condition.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DNF in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (6614910..6615335, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PIF / Ping-Pong family of plant transposase Neighboring gene RNA-binding protein 47B Neighboring gene KIP-related protein 6 Neighboring gene ATP/ADP isopentenyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. DAY NEUTRAL FLOWERING does not act through GIGANTEA and FKF1 to regulate CONSTANS expression and flowering time. Morris K, et al. Plant Signal Behav, 2010 Sep. PMID 20818180, Free PMC Article
    2. DAY NEUTRAL FLOWERING represses CONSTANS to prevent Arabidopsis flowering early in short days. Morris K, et al. Plant Cell, 2010 Apr. PMID 20435904, Free PMC Article
    3. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The DAY NEUTRAL FLOWERING (DNF) protein is an E3 ligase involved in repressing CO expression in the early part of the day.
      Title: DAY NEUTRAL FLOWERING does not act through GIGANTEA and FKF1 to regulate CONSTANS expression and flowering time.
    2. DAY NEUTRAL FLOWERING is and E3 ligase that represses CONSTANS, and is crucial in enabling Arabidopsis to distinguish between long days and short days.
      Title: DAY NEUTRAL FLOWERING represses CONSTANS to prevent Arabidopsis flowering early in short days.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of short-day photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING/U-box superfamily protein
    NP_188545.1
    • DAY NEUTRAL FLOWERING (DNF); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT3G14320.1); Has 4985 Blast hits to 4971 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 1264; Fungi - 164; Plants - 3129; Viruses - 3; Other Eukaryotes - 425 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6614910..6615335 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112801.1 → NP_188545.1  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188545.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4FE36, Q9LJL6
      UniProtKB/TrEMBL
      A0A178VMY8, A0A5S9XDS8
      Conserved Domains (2) summary
      cd00162
      Location:79 → 120
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl17238
      Location:78 → 121
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LJL6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools