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    nuclear pore complex protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820629, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nuclear pore complex protein
    Primary source
    TAIR:AT3G14120
    Locus tag
    AT3G14120
    See related
    Araport:AT3G14120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    25
    Sequence:
    Chromosome: 3; NC_003074.8 (4677699..4685666)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene ncRNA Neighboring gene 2-oxoglutarate-dependent dioxygenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202960.1
    NM_112268.3
    NM_180250.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear pore complex protein
    NP_001189889.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252).
    NP_188028.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink).
    NP_850581.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 271 Blast hits to 268 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 69; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4677699..4685666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180250.3 → NP_850581.1  nuclear pore complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850581.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD0, A0A5S9XC05, A0A654F721
      Conserved Domains (1) summary
      pfam04121
      Location:194 → 872
      Nup84_Nup100; Nuclear pore protein 84 / 107

    2. NM_001202960.1 → NP_001189889.1  nuclear pore complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189889.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMD0, A0A5S9XC05
      Conserved Domains (1) summary
      pfam04121
      Location:194 → 893
      Nup84_Nup100; Nuclear pore protein 84 / 107

    3. NM_112268.3 → NP_188028.2  nuclear pore complex protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188028.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JFR3, F4JFR5, Q84ME0, Q8L748, Q9LJH6
      UniProtKB/TrEMBL
      A0A178VMD0, A0A5S9XC05
      Conserved Domains (1) summary
      pfam04121
      Location:194 → 872
      Nup84_Nup100; Nuclear pore protein 84 / 107
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L748.1

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