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    NAP1;4 nucleosome assembly protein1;4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820589, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NAP1;4
    Official Full Name
    nucleosome assembly protein1;4
    Primary source
    TAIR:AT3G13782
    Locus tag
    AT3G13782
    See related
    Araport:AT3G13782
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NFA04; NFA4; nucleosome assembly protein1;4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4
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    Genomic context

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    See NAP1;4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (4526220..4528646)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transmembrane nine 7 Neighboring gene SMAD/FHA domain-containing protein Neighboring gene cell wall invertase 5 Neighboring gene ncRNA Neighboring gene Glycosyl hydrolases family 32 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Distinct roles of the histone chaperones NAP1 and NRP and the chromatin-remodeling factor INO80 in somatic homologous recombination in Arabidopsis thaliana. Zhou W, et al. Plant J, 2016 Nov. PMID 27352805
    2. Molecular and reverse genetic characterization of NUCLEOSOME ASSEMBLY PROTEIN1 (NAP1) genes unravels their function in transcription and nucleotide excision repair in Arabidopsis thaliana. Liu Z, et al. Plant J, 2009 Jul. PMID 19228338
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338075.1
    NM_112230.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within double-strand break repair via homologous recombination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleosome assembly protein1;4
    NP_001319544.1
    • nucleosome assembly protein1;4 (NAP1;4); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: response to cadmium ion, nucleosome assembly, nucleotide-excision repair; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;2 (TAIR:AT2G19480.3); Has 1671 Blast hits to 1646 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1036; Fungi - 206; Plants - 209; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4526220..4528646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338075.1 → NP_001319544.1  nucleosome assembly protein1;4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JEI8, Q9LIC0
      UniProtKB/TrEMBL
      A0A178VHH5, A0A5S9XC42
      Conserved Domains (1) summary
      pfam00956
      Location:58 → 296
      NAP; Nucleosome assembly protein (NAP)

    2. NM_112230.3 → NP_187993.2  nucleosome assembly protein1;4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187993.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JEI8, Q9LIC0
      UniProtKB/TrEMBL
      A0A178VHH5, A0A5S9XC42
      Conserved Domains (1) summary
      pfam00956
      Location:58 → 296
      NAP; Nucleosome assembly protein (NAP)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JEI8.1

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