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    LRX3 Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826964, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LRX3
    Official Full Name
    Leucine-rich repeat (LRR) family protein
    Primary source
    TAIR:AT4G13340
    Locus tag
    AT4G13340
    See related
    Araport:AT4G13340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    leucine-rich repeat/extensin 3; T9E8.80; T9E8_80
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    Genomic context

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    See LRX3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (7758275..7761362)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 71, subfamily A, polypeptide 20 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene uncharacterized protein Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene NSP (nuclear shuttle protein)-interacting GTPase Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene serine/arginine repetitive matrix protein, putative (DUF936)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Leucine-rich repeat extensin proteins regulate plant salt tolerance in Arabidopsis. Zhao C, et al. Proc Natl Acad Sci U S A, 2018 Dec 18. PMID 30514814, Free PMC Article
    2. Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth. Draeger C, et al. BMC Plant Biol, 2015 Jun 24. PMID 26099801, Free PMC Article
    3. Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis. Lam BC, et al. Plant Cell, 2001 Nov. PMID 11701884, Free PMC Article
    4. Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Baumberger N, et al. Plant Physiol, 2003 Mar. PMID 12644681, Free PMC Article
    5. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117407.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptide binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of cell wall ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    Leucine-rich repeat (LRR) family protein
    NP_193070.1
    • Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 637879 Blast hits to 129296 proteins in 3596 species: Archae - 1468; Bacteria - 134638; Metazoa - 215120; Fungi - 74599; Plants - 120849; Viruses - 14592; Other Eukaryotes - 76613 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7758275..7761362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117407.3 → NP_193070.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193070.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T0K5
      UniProtKB/TrEMBL
      A0A178UXP3, A0A654FNR6
      Conserved Domains (3) summary
      PLN00113
      Location:81 → 345
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      pfam04554
      Location:719 → 759
      Extensin_2; Extensin-like region
      sd00033
      Location:140 → 163
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0K5.1

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