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    Apon apolipoprotein N [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304603, updated on 9-Dec-2024

    Summary

    Official Symbol
    Aponprovided by RGD
    Official Full Name
    apolipoprotein Nprovided by RGD
    Primary source
    RGD:1311384
    See related
    EnsemblRapid:ENSRNOG00000033466 AllianceGenome:RGD:1311384
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311384
    Summary
    Predicted to be involved in cholesterol metabolic process. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 636.1) See more
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    Genomic context

    See Apon in Genome Data Viewer
    Location:
    7q11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (1271514..1272917, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (686943..688346, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (2675796..2677199, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene major intrinsic protein of lens fiber Neighboring gene timeless circadian regulator Neighboring gene U6 spliceosomal RNA Neighboring gene apolipoprotein F Neighboring gene signal transducer and activator of transcription 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009385.1NP_001009385.1  apolipoprotein N precursor

      See identical proteins and their annotated locations for NP_001009385.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088168
      UniProtKB/TrEMBL
      A6KSB3, F7FBD9, Q5M890
      Related
      ENSRNOP00000040341.2, ENSRNOT00000043908.6
      Conserved Domains (1) summary
      pfam15148
      Location:53250
      Apolipo_F; Apolipoprotein F

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      1271514..1272917 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)