U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828740, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    F-box/RNI-like/FBD-like domains-containing protein
    Primary source
    TAIR:AT4G26340
    Locus tag
    AT4G26340
    See related
    Araport:AT4G26340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25K17.150; T25K17_150
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (13324130..13325590)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_118767.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    F-box/RNI-like/FBD-like domains-containing protein
    NP_194364.2
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G26350.1); Has 2167 Blast hits to 2117 proteins in 47 species: Archae - 0; Bacteria - 2; Metazoa - 45; Fungi - 0; Plants - 2120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13324130..13325590
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118767.3 → NP_194364.2  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194364.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1R7, Q9STQ1
      UniProtKB/TrEMBL
      A0A178V5F0, A0A5S9XWX2
      Conserved Domains (4) summary
      smart00579
      Location:348 → 419
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:130 → 151
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:151 → 176
      LRR_2; Leucine Rich Repeat
      pfam00646
      Location:2 → 38
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1R7.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools