Pjvk pejvakin [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pjvkprovided by RGD
Official Full Name: pejvakinprovided by RGD
Primary source: RGD:1587131
See related: EnsemblRapid:ENSRNOG00000038165 AllianceGenome:RGD:1587131
Gene type: protein coding
RefSeq status: MODEL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Dfnb59
Summary: Predicted to be involved in pexophagy; programmed cell death in response to reactive oxygen species; and regulation of peroxisome organization. Predicted to act upstream of or within detection of mechanical stimulus involved in sensory perception of sound and stereocilium maintenance. Predicted to be located in several cellular components, including cytoskeleton; peroxisomal membrane; and stereocilium base. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 59. Orthologous to human PJVK (pejvakin). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 30.5) See more
Orthologs: human mouse all
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Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (82002106..82012273)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (61594644..61605051)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (63508386..63518163)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Submit: New GeneRIF Correction

Process	Evidence Code	Pubs
acts_upstream_of_or_within detection of mechanical stimulus involved in sensory perception of sound	ISO Inferred from Sequence Orthology more info
involved_in pexophagy	ISO Inferred from Sequence Orthology more info
involved_in programmed cell death in response to reactive oxygen species	ISO Inferred from Sequence Orthology more info
involved_in regulation of peroxisome organization	ISO Inferred from Sequence Orthology more info
involved_in response to reactive oxygen species	ISO Inferred from Sequence Orthology more info
involved_in sensory perception of sound	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within sensory perception of sound	ISO Inferred from Sequence Orthology more info
involved_in sensory perception of sound	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within stereocilium maintenance	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in ciliary rootlet	ISO Inferred from Sequence Orthology more info
located_in cortical actin cytoskeleton	ISO Inferred from Sequence Orthology more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in endomembrane system	IEA Inferred from Electronic Annotation more info
is_active_in neuronal cell body	IBA Inferred from Biological aspect of Ancestor more info
located_in neuronal cell body	ISO Inferred from Sequence Orthology more info
located_in peroxisomal membrane	ISO Inferred from Sequence Orthology more info
located_in stereocilium base	ISO Inferred from Sequence Orthology more info