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    Prr15 proline rich 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 312358, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Prr15provided by RGD
    Official Full Name
    proline rich 15provided by RGD
    Primary source
    RGD:1311589
    See related
    EnsemblRapid:ENSRNOG00000009564 AllianceGenome:RGD:1311589
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311589
    Summary
    Orthologous to human PRR15 (proline rich 15). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 219.2), Testes (RPKM 47.7) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prr15 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (84762357..84765403)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (83432002..83435582)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (84478839..84481885)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102282 Neighboring gene chimerin 2 Neighboring gene uncharacterized LOC102553678 Neighboring gene eukaryotic translation elongation factor 1 beta 2, pseudogene 1 Neighboring gene WAS/WASL interacting protein family, member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC156783

    General protein information

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    Preferred Names
    proline-rich protein 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104527.1 → NP_001097997.1  proline-rich protein 15

      See identical proteins and their annotated locations for NP_001097997.1

      Status: PROVISIONAL

      Source sequence(s)
      BC127529
      UniProtKB/TrEMBL
      A0A8I5ZQ45, A0JPP6, A6K0U8
      Related
      ENSRNOP00000104503.1, ENSRNOT00000139893.1
      Conserved Domains (1) summary
      pfam15321
      Location:14 → 106
      ATAD4; ATPase family AAA domain containing 4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      84762357..84765403
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107557.2 → XP_038963485.1  proline-rich protein 15 isoform X1

      UniProtKB/TrEMBL
      A6K0U7, F7EPF1
      Related
      ENSRNOP00000012668.5, ENSRNOT00000012668.7
      Conserved Domains (1) summary
      pfam15321
      Location:66 → 158
      ATAD4; ATPase family AAA domain containing 4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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