Chchd2l3 coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Chchd2l3provided by RGD
Official Full Name: coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3provided by RGD
Primary source: RGD:1309819
See related: EnsemblRapid:ENSRNOG00000051180 AllianceGenome:RGD:1309819
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Chchd2; Scand3-ps1
Summary: Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in Parkinson's disease 22. Orthologous to several human genes including CHCHD2 (coiled-coil-helix-coiled-coil-helix domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: 9q36

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	9	NC_086027.1 (101947769..101948440, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	9	NC_051344.1 (94500439..94501110, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	9	NC_005108.4 (101388148..101388819, complement)

Chromosome 9 - NC_086027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH94823 (e-PCR)
- UniSTS:120069

AU049267 (e-PCR)
- UniSTS:145715

RH137104 (e-PCR)
- UniSTS:219192

RH138649 (e-PCR)
- UniSTS:220736

AV006093 (e-PCR)
- UniSTS:179276

RH134402 (e-PCR)
- UniSTS:217684

RH138684 (e-PCR)
- UniSTS:220771

AI711004 (e-PCR)
- UniSTS:243811

RH141085 (e-PCR)
- UniSTS:223083

RH142798 (e-PCR)
- UniSTS:232045

RH129042 (e-PCR)
- UniSTS:212350

RH141366 (e-PCR)
- UniSTS:223362

RH138720 (e-PCR)
- UniSTS:220807

BE096988 (e-PCR)
- UniSTS:244131

BF399653 (e-PCR)
- UniSTS:247751

BF387881 (e-PCR)
- UniSTS:244458

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in mitochondrion organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in mitochondrion organization	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial

Names: SCAN domain containing 3 pseudogene; SCAN domain containing 3, pseudogene 1; coiled-coil-helix-coiled-coil-helix domain containing 2; coiled-coil-helix-coiled-coil-helix domain containing 2-like 3; coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001015019.2 → NP_001015019.2 coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial

Status: VALIDATED

Source sequence(s)

JAXUCZ010000009

UniProtKB/TrEMBL

M0R785

Related

ENSRNOP00000065307.1, ENSRNOT00000071817.4