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    DUF399 family protein, putative (DUF399 and DUF3411) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824780, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DUF399 family protein, putative (DUF399 and DUF3411)
    Primary source
    TAIR:AT3G56140
    Locus tag
    AT3G56140
    See related
    Araport:AT3G56140
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (20829282..20833252)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene biotin/lipoyl attachment domain-containing protein Neighboring gene eukaryotic translation initiation factor 3C Neighboring gene Sodium Bile acid symporter family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339771.1
    NM_115472.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DUF399 family protein, putative (DUF399 and DUF3411)
    NP_191173.2
    • Protein of unknown function (DUF399 and DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT2G40400.2); Has 538 Blast hits to 538 proteins in 131 species: Archae - 0; Bacteria - 182; Metazoa - 33; Fungi - 6; Plants - 279; Viruses - 6; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20829282..20833252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339772.1 → NP_001326110.1  DUF399 family protein, putative (DUF399 and DUF3411) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWG3, Q9LYM7
      UniProtKB/TrEMBL
      A0A178V5X8, A0A5S9XM10
      Conserved Domains (2) summary
      pfam04187
      Location:148 → 373
      Cofac_haem_bdg; Haem-binding uptake, Tiki superfamily, ChaN
      pfam11891
      Location:479 → 663
      DUF3411; Domain of unknown function (DUF3411)

    2. NM_115472.5 → NP_191173.2  DUF399 family protein, putative (DUF399 and DUF3411) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191173.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWG3, Q9LYM7
      UniProtKB/TrEMBL
      A0A178V5X8, A0A5S9XM10
      Conserved Domains (2) summary
      pfam04187
      Location:148 → 373
      Cofac_haem_bdg; Haem-binding uptake, Tiki superfamily, ChaN
      pfam11891
      Location:479 → 663
      DUF3411; Domain of unknown function (DUF3411)

    3. NM_001339771.1 → NP_001326111.1  DUF399 family protein, putative (DUF399 and DUF3411) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNA2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWG3.1

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