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    polyketide cyclase/dehydrase/lipid transport superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830532, updated on 18-Sep-2024

    Summary

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    Official Full Name
    polyketide cyclase/dehydrase/lipid transport superfamily protein
    Primary source
    TAIR:AT5G06440
    Locus tag
    AT5G06440
    See related
    Araport:AT5G06440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MHF15.4; MHF15_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (1964420..1967500, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene Zinc finger (CCCH-type/C3HC4-type RING finger) family protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene ubiquitin activating enzyme 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036765.2
    NM_001203312.1
    NM_001342877.1
    NM_001342878.1
    NM_001342879.1
    NM_120727.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    polyketide cyclase/dehydrase/lipid transport superfamily protein
    NP_001031842.1
    • BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
    NP_001190241.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3).
    NP_001318492.1
    • BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 155 Blast hits to 153 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 6; Plants - 101; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    NP_196262.3
    • BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1964420..1967500 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120727.6 → NP_196262.3  polyketide cyclase/dehydrase/lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196262.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAR2, A0A654FZ17, F4K3U5
      Conserved Domains (1) summary
      cl14643
      Location:56 → 275
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    2. NM_001342878.1 → NP_001332441.1  polyketide cyclase/dehydrase/lipid transport superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FCS4, Q8RWI8
      Conserved Domains (1) summary
      cl14643
      Location:5 → 201
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    3. NM_001036765.2 → NP_001031842.1  polyketide cyclase/dehydrase/lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031842.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAR2, A0A654FZ17, F4K3U5
      Conserved Domains (1) summary
      cl14643
      Location:56 → 275
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    4. NM_001342877.1 → NP_001318492.1  polyketide cyclase/dehydrase/lipid transport superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K3U8

    5. NM_001342879.1 → NP_001332440.1  polyketide cyclase/dehydrase/lipid transport superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGX8, A0A7G2FCS4

    6. NM_001203312.1 → NP_001190241.1  polyketide cyclase/dehydrase/lipid transport superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190241.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAR2, A0A5S9Y1X7, F4K3U7
      Conserved Domains (1) summary
      cl14643
      Location:56 → 282
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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