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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830499, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT5G06120
    Locus tag
    AT5G06120
    See related
    Araport:AT5G06120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K16F4.8; K16F4_8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    30
    Sequence:
    Chromosome: 5; NC_003076.8 (1843828..1853051)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate acyltransferase 7 Neighboring gene myb domain protein 33 Neighboring gene DnaJ and myb-like DNA-binding domain-containing protein Neighboring gene tRNA-Leu Neighboring gene chaperone protein dnaJ-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342851.1
    NM_120694.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nuclear export signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001190235.1
    • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1).
    NP_001190236.1
    • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1).
    NP_001318488.1
    • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1).
    NP_196230.2
    • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 572 Blast hits to 534 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1843828..1853051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342852.1 → NP_001330879.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BC50, Q9LHS4

    2. NM_001342853.1 → NP_001330881.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUD3, A0A384KE19, F4K2C3, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:26 → 90
      IBN_N; Importin-beta N-terminal domain

    3. NM_001203307.2 → NP_001190236.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190236.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUD3, A0A384KE19, F4K2C3, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:26 → 90
      IBN_N; Importin-beta N-terminal domain

    4. NM_001342854.1 → NP_001330880.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:26 → 90
      IBN_N; Importin-beta N-terminal domain

    5. NM_001342855.1 → NP_001330878.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:26 → 90
      IBN_N; Importin-beta N-terminal domain

    6. NM_001203306.2 → NP_001190235.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190235.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K2C2, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:34 → 98
      IBN_N; Importin-beta N-terminal domain

    7. NM_001342856.1 → NP_001330877.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:26 → 90
      IBN_N; Importin-beta N-terminal domain

    8. NM_001342850.1 → NP_001330882.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US27, A0A1P8BC62, A0A384L334, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:26 → 90
      IBN_N; Importin-beta N-terminal domain

    9. NM_001342851.1 → NP_001318488.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUD3, A0A384KE19, F4K2C3, Q9LHS4
      Conserved Domains (1) summary
      smart00913
      Location:26 → 90
      IBN_N; Importin-beta N-terminal domain

    10. NM_120694.2 → NP_196230.2  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196230.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K2C1, Q9LHS4
      Conserved Domains (1) summary
      pfam03810
      Location:34 → 98
      IBN_N; Importin-beta N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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