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    LIL3:2 Chlorophyll A-B binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834757, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LIL3:2
    Official Full Name
    Chlorophyll A-B binding family protein
    Primary source
    TAIR:AT5G47110
    Locus tag
    AT5G47110
    See related
    Araport:AT5G47110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K14A3.6; K14A3_6
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    Genomic context

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    See LIL3:2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (19133986..19135414, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene coiled-coil protein Neighboring gene calcineurin B-like protein 9 Neighboring gene BAX inhibitor 1 Neighboring gene Bax inhibitor-1 family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lil3 dimerization and chlorophyll binding in Arabidopsis thaliana. Mork-Jansson AE, et al. FEBS Lett, 2015 Oct 7. PMID 26320415
    2. Altered levels of LIL3 isoforms in Arabidopsis lead to disturbed pigment-protein assembly and chlorophyll synthesis, chlorotic phenotype and impaired photosynthetic performance. Lohscheider JN, et al. Plant Cell Environ, 2015 Oct. PMID 25808681
    3. Functional analysis of light-harvesting-like protein 3 (LIL3) and its light-harvesting chlorophyll-binding motif in Arabidopsis. Takahashi K, et al. J Biol Chem, 2014 Jan 10. PMID 24275650, Free PMC Article
    4. LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis. Tanaka R, et al. Proc Natl Acad Sci U S A, 2010 Sep 21. PMID 20823244, Free PMC Article
    5. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124082.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein-membrane adaptor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of chlorophyll biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of phytol biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of vitamin E biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 
    part_of thylakoid light-harvesting complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Chlorophyll A-B binding family protein
    NP_199522.2
    • Chlorophyll A-B binding family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis, light harvesting; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT4G17600.1); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19133986..19135414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124082.5 → NP_199522.2  Chlorophyll A-B binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199522.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NKS4, Q9LTB7
      UniProtKB/TrEMBL
      A0A178UJF0, A0A5S9YBR7, A0A654G8Z6
      Conserved Domains (1) summary
      PLN00014
      Location:2 → 258
      PLN00014; light-harvesting-like protein 3; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NKS4.1

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