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    RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835391, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box superfamily protein
    Primary source
    TAIR:AT5G53110
    Locus tag
    AT5G53110
    See related
    Araport:AT5G53110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MFH8.3; MFH8_3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (21528950..21533159)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene spermidine synthase 3 Neighboring gene cyclic nucleotide gated channel 1 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124690.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box superfamily protein
    NP_200123.2
    • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46495.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21528950..21533159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124690.3 → NP_200123.2  RING/U-box superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200123.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UPH8, F4KJ04
      Conserved Domains (4) summary
      pfam12678
      Location:325 → 372
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:329 → 372
      zf-RING_2; Ring finger domain
      pfam13947
      Location:42 → 134
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      pfam14380
      Location:150 → 232
      WAK_assoc; Wall-associated receptor kinase C-terminal
    Nucleotide Protein
    Heading Accession and Version

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