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    SRR1 sensitivity to red light reduced protein (SRR1) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836075, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SRR1
    Official Full Name
    sensitivity to red light reduced protein (SRR1)
    Primary source
    TAIR:AT5G59560
    Locus tag
    AT5G59560
    See related
    Araport:AT5G59560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2O15.23; F2O15_23; SENSITIVITY TO RED LIGHT REDUCED 1
    Summary
    Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.
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    Genomic context

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    See SRR1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (24000476..24001957, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene zinc finger (C3HC4-type RING finger) family protein Neighboring gene ncRNA Neighboring gene Homeodomain-like superfamily protein Neighboring gene UDP-glucosyl transferase 76E1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SRR1 is essential to repress flowering in non-inductive conditions in Arabidopsis thaliana. Johansson M, et al. J Exp Bot, 2014 Nov. PMID 25129129, Free PMC Article
    2. The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. Staiger D, et al. Genes Dev, 2003 Jan 15. PMID 12533513, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125348.4
    NM_180893.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in red or far-red light signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within red, far-red light phototransduction IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    sensitivity to red light reduced protein (SRR1)
    NP_200764.1
    • SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_851224.1
    • SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 187 Blast hits to 182 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 13; Plants - 69; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24000476..24001957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125348.4 → NP_200764.1  sensitivity to red light reduced protein (SRR1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200764.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWZ6, Q9LTH5
      UniProtKB/TrEMBL
      A0A178URN0, A0A5S9YFI6, Q24JI3, Q4PRK8
      Conserved Domains (1) summary
      PLN03093
      Location:1 → 274
      PLN03093; Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

    2. NM_180893.2 → NP_851224.1  sensitivity to red light reduced protein (SRR1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851224.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWZ6, Q9LTH5
      UniProtKB/TrEMBL
      A0A178URN0, A0A5S9YFI6, Q24JI3, Q4PRK8
      Conserved Domains (1) summary
      PLN03093
      Location:1 → 274
      PLN03093; Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWZ6.2

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