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    TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836218, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TCP5
    Official Full Name
    TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
    Primary source
    TAIR:AT5G60970
    Locus tag
    AT5G60970
    See related
    Araport:AT5G60970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cycloidea and PCF transcription factor 5; MSL3.11; MSL3_11; TEOSINTE BRANCHED 1
    Summary
    TCP gene involved in heterochronic control of leaf differentiation.
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    Genomic context

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    See TCP5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (24535337..24537244, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ECA1 gametogenesis related family protein Neighboring gene tRNA-Thr Neighboring gene ncRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TCP5 controls leaf margin development by regulating KNOX and BEL-like transcription factors in Arabidopsis. Yu H, et al. J Exp Bot, 2021 Feb 27. PMID 33258902
    2. Arabidopsis Transcription Factor TCP5 Controls Plant Thermomorphogenesis by Positively Regulating PIF4 Activity. Han X, et al. iScience, 2019 May 31. PMID 31078552, Free PMC Article
    3. A protracted and dynamic maturation schedule underlies Arabidopsis leaf development. Efroni I, et al. Plant Cell, 2008 Sep. PMID 18805992, Free PMC Article
    4. Roles of miR319 and TCP Transcription Factors in Leaf Development. Koyama T, et al. Plant Physiol, 2017 Oct. PMID 28842549, Free PMC Article
    5. TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis. Koyama T, et al. Plant Cell, 2010 Nov. PMID 21119060, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TCP5 controls leaf margin development by regulating KNOX and BEL-like transcription factors in Arabidopsis.
      Title: TCP5 controls leaf margin development by regulating KNOX and BEL-like transcription factors in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125490.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf senescence IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of development, heterochronic IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
    NP_200905.1
    • ''TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5'' (TCP5); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP domain protein 17 (TAIR:AT5G08070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24535337..24537244 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125490.3 → NP_200905.1  TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200905.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FME3
      UniProtKB/TrEMBL
      A0A178USK0, A0A5S9YI89, A0A7G2FHT7
      Conserved Domains (1) summary
      cl23822
      Location:62 → 130
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FME3.1

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