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    HCO3- transporter family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832617, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HCO3- transporter family
    Primary source
    TAIR:AT5G25430
    Locus tag
    AT5G25430
    See related
    Araport:AT5G25430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18G18.170; F18G18_170
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    14
    Sequence:
    Chromosome: 5; NC_003076.8 (8851047..8854491)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Xanthine/uracil/vitamin C permease Neighboring gene glycine-rich protein Neighboring gene Protein kinase superfamily protein Neighboring gene Cytochrome bd ubiquinol oxidase, 14kDa subunit Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables solute:inorganic anion antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic anion transmembrane transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in monoatomic anion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HCO3- transporter family
    NP_001318647.1
    • HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT4G32510.1); Has 2636 Blast hits to 1421 proteins in 197 species: Archae - 0; Bacteria - 18; Metazoa - 1993; Fungi - 285; Plants - 221; Viruses - 2; Other Eukaryotes - 117 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8851047..8854491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343926.1 → NP_001318647.1  HCO3- transporter family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D5LUP5, Q3E954
      UniProtKB/TrEMBL
      A0A178U8X1, A0A5S9Y746
      Conserved Domains (1) summary
      cl23746
      Location:9 → 547
      Xan_ur_permease; Permease family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E954.2

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