U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    pre-mRNA-splicing factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824839, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    pre-mRNA-splicing factor
    Primary source
    TAIR:AT3G56720
    Locus tag
    AT3G56720
    See related
    Araport:AT3G56720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (21010632..21013589)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene sigma factor binding protein 1 Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene Ubiquitin-associated (UBA) protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001203177.2
    NM_001203178.2
    NM_001339808.1
    NM_001339809.1
    NM_001339810.1
    NM_115531.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    pre-mRNA-splicing factor
    NP_001190106.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
    NP_001190107.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages.
    NP_191231.2
    • unknown protein; Has 6239 Blast hits to 4635 proteins in 365 species: Archae - 6; Bacteria - 230; Metazoa - 3389; Fungi - 659; Plants - 656; Viruses - 13; Other Eukaryotes - 1286 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21010632..21013589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339807.1 → NP_001326861.1  pre-mRNA-splicing factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQJ9

    2. NM_115531.4 → NP_191231.2  pre-mRNA-splicing factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191231.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1A6N0, Q9LET5
      Conserved Domains (1) summary
      pfam15477
      Location:318 → 385
      SMAP; Small acidic protein family

    3. NM_001339808.1 → NP_001326862.1  pre-mRNA-splicing factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQK1

    4. NM_001339809.1 → NP_001326863.1  pre-mRNA-splicing factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQK1

    5. NM_001339810.1 → NP_001326864.1  pre-mRNA-splicing factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQK2, Q9LET5

    6. NM_001203178.2 → NP_001190107.1  pre-mRNA-splicing factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190107.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6Q8, C0Z252
      Conserved Domains (2) summary
      PRK12678
      Location:7 → 214
      PRK12678; transcription termination factor Rho; Provisional
      TIGR01642
      Location:51 → 146
      U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor

    7. NM_001203177.2 → NP_001190106.1  pre-mRNA-splicing factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190106.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0R5, Q9LET5
      Conserved Domains (1) summary
      pfam15477
      Location:319 → 386
      SMAP; Small acidic protein family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.