U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ERD (early-responsive to dehydration stress) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827214, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    ERD (early-responsive to dehydration stress) family protein
    Primary source
    TAIR:AT4G15430
    Locus tag
    AT4G15430
    See related
    Araport:AT4G15430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3760W; FCAALL.292
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (8827600..8831573)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNAse II-like 1 Neighboring gene Ubiquitin fusion degradation UFD1 family protein Neighboring gene hydroperoxide lyase 1 Neighboring gene Senescence/dehydration-associated protein-like protein Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001160765.2
    NM_117632.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ERD (early-responsive to dehydration stress) family protein
    NP_001154237.1
    • ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1442 Blast hits to 1273 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 688; Plants - 448; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
    NP_193278.4
    • ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1447 Blast hits to 1280 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 705; Plants - 434; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8827600..8831573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001160765.2 → NP_001154237.1  ERD (early-responsive to dehydration stress) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154237.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A097NUP1, A0A178UZZ9, A0A384KBH1, A0A5S9XTH5
      Conserved Domains (2) summary
      COG5594
      Location:3 → 679
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:373 → 644
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate

    2. NM_117632.5 → NP_193278.4  ERD (early-responsive to dehydration stress) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193278.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JK40, O23396, Q8VZM5
      UniProtKB/TrEMBL
      A0A5S9XTH5
      Conserved Domains (3) summary
      pfam02714
      Location:322 → 645
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
      pfam13967
      Location:6 → 179
      RSN1_TM; Late exocytosis, associated with Golgi transport
      pfam14703
      Location:238 → 301
      PHM7_cyt; Cytosolic domain of 10TM putative phosphate transporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZM5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.