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    ARA1 arabinose kinase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827299, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARA1
    Official Full Name
    arabinose kinase
    Primary source
    TAIR:AT4G16130
    Locus tag
    AT4G16130
    See related
    Araport:AT4G16130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinose kinase; ARABINOSE KINASE; ATISA1; DL4105W; FCAALL.288; ISA1
    Summary
    Similar to galactokinase.
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    Genomic context

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    See ARA1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    29
    Sequence:
    Chromosome: 4; NC_003075.7 (9120777..9127938)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene response regulator 2 Neighboring gene COBRA-like protein-7 precursor Neighboring gene proline-rich family protein Neighboring gene GATA type zinc finger transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabinose Kinase-Deficient Mutant of Arabidopsis thaliana. Dolezal O, et al. Plant Physiol, 1991 Aug. PMID 16668327, Free PMC Article
    2. The role of arabinokinase in arabinose toxicity in plants. Behmüller R, et al. Plant J, 2016 Aug. PMID 27145098
    3. The arabinose kinase, ARA1, gene of Arabidopsis is a novel member of the galactose kinase gene family. Sherson S, et al. Plant Mol Biol, 1999 Mar. PMID 10344205
    4. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117706.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables L-arabinokinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables L-arabinokinase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within arabinose metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within arabinose metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    arabinose kinase
    NP_193348.1
    • arabinose kinase (ARA1); FUNCTIONS IN: L-arabinokinase activity, ATP binding, galactokinase activity; INVOLVED IN: arabinose metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206), Galactokinase galactose-binding domain (InterPro:IPR019539), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Galactokinase, glycosyltransferase (InterPro:IPR012369), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: Mevalonate/galactokinase family protein (TAIR:AT3G42850.1); Has 3503 Blast hits to 3497 proteins in 1405 species: Archae - 74; Bacteria - 2553; Metazoa - 183; Fungi - 124; Plants - 132; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9120777..9127938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117706.3 → NP_193348.1  arabinose kinase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193348.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DI14, O23461, O23723, Q0WLW4
      UniProtKB/TrEMBL
      A0A5S9XT46, A0A654FPT4
      Conserved Domains (2) summary
      COG0153
      Location:543 → 1027
      GalK; Galactokinase [Carbohydrate transport and metabolism]
      cl10013
      Location:65 → 227
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23461.1

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