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    SRP72 RNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843093, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SRP72 RNA-binding domain-containing protein
    Primary source
    TAIR:AT1G67680
    Locus tag
    AT1G67680
    See related
    Araport:AT1G67680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12A21.17; F12A21_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (25365756..25368834, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Restriction endonuclease, type II-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene Zincin-like metalloproteases family protein Neighboring gene multidrug resistance protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105436.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 7S RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SRP72 RNA-binding domain-containing protein
    NP_176936.1
    • SRP72 RNA-binding domain; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP72 subunit, RNA-binding (InterPro:IPR013699); BEST Arabidopsis thaliana protein match is: SRP72 RNA-binding domain (TAIR:AT1G67650.1); Has 655 Blast hits to 637 proteins in 232 species: Archae - 21; Bacteria - 65; Metazoa - 237; Fungi - 154; Plants - 42; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25365756..25368834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105436.4 → NP_176936.1  SRP72 RNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176936.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WI60, A0A5S9WST6, Q9FXD4
      Conserved Domains (2) summary
      pfam08492
      Location:596 → 609
      SRP72; SRP72 RNA-binding domain
      pfam17004
      Location:58 → 139
      SRP_TPR_like; Putative TPR-like repeat
    Nucleotide Protein
    Heading Accession and Version

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