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    FAM218A family with sequence similarity 218 member A [ Homo sapiens (human) ]

    Gene ID: 152756, updated on 10-Dec-2024

    Summary

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    Official Symbol
    FAM218Aprovided by HGNC
    Official Full Name
    family with sequence similarity 218 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:26466
    See related
    Ensembl:ENSG00000250486 AllianceGenome:HGNC:26466
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C4orf39; TRIM61-AS1
    Orthologs
    all
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    Genomic context

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    See FAM218A in Genome Data Viewer
    Location:
    4q32.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (164956948..164959131)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (168304611..168306794)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (165878100..165880283)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene NACA family member 3, pseudogene Neighboring gene tripartite motif-containing protein 60-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22111 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22112 Neighboring gene tripartite motif containing 61 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22114 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:165912150-165912843 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:165916505-165917374 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:165917390-165918172 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:165918173-165918953 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:165922487-165923241 Neighboring gene tripartite motif-containing 75 pseudogene Neighboring gene ribosomal protein L21 pseudogene 51

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Loose ends: almost one in five human genes still have unresolved coding status. Abascal F, et al. Nucleic Acids Res, 2018 Aug 21. PMID 29982784, Free PMC Article
    2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article
    3. Chr21 protein-protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer's disease. Viard J, et al. Life Sci Alliance, 2022 Aug 1. PMID 35914814, Free PMC Article
    4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. Lamesch P, et al. Genomics, 2007 Mar. PMID 17207965, Free PMC Article
    5. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Other Names

    • TRIM61 antisense RNA 1
    • protein FAM218A
    • uncharacterized protein C4orf39

    Clone Names

    • FLJ31659

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_160935.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC106872
      Related
      ENST00000648094.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      164956948..164959131
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      168304611..168306794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_153027.2: Suppressed sequence

      Description
      NM_153027.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96MZ4.1 GenPept UniProtKB/Swiss-Prot:Q96MZ4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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