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    LOC102724152 uncharacterized LOC102724152 [ Homo sapiens (human) ]

    Gene ID: 102724152, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC102724152
    Gene description
    uncharacterized LOC102724152
    See related
    Ensembl:ENSG00000301235
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC102724152 in Genome Data Viewer
    Location:
    6q26
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (163664366..163671484, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (165029114..165036230, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (164085398..164092516, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene basic proline-rich protein-like Neighboring gene H3K27ac hESC enhancers GRCh37_chr6:163835002-163835654 and GRCh37_chr6:163835655-163836308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17771 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17772 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:163844209-163844453 Neighboring gene colon adenocarcinoma hypermethylated Neighboring gene QKI, KH domain containing RNA binding Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25419 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:163956589-163956770 Neighboring gene NANOG hESC enhancer GRCh37_chr6:163964125-163964810 Neighboring gene Sharpr-MPRA regulatory region 9625 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:164008464-164009663 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:164013504-164014052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164032378-164032878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164032879-164033379 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:164039878-164041077 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25422 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25423 Neighboring gene uncharacterized LOC124901498 Neighboring gene uncharacterized LOC105378104

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134620.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX095160
      Related
      ENST00000777239.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      163664366..163671484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      165029114..165036230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials