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    Stum stum, mechanosensory transduction mediator homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689499, updated on 9-Dec-2024

    Summary

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    Symbol
    Stumprovided by RGD
    Full Name
    stum, mechanosensory transduction mediator homologprovided by RGD
    Primary source
    RGD:1592263
    See related
    EnsemblRapid:ENSRNOG00000074432 AllianceGenome:RGD:1592263
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human STUM (stum, mechanosensory transduction mediator homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 92.4), Uterus (RPKM 17.2) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Stum in Genome Data Viewer
    Location:
    13q26
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (94704074..94759097, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (92172175..92227205, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (98722847..98773172, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096326 Neighboring gene inositol-trisphosphate 3-kinase B Neighboring gene uncharacterized LOC108352582 Neighboring gene uncharacterized LOC120096327 Neighboring gene poly (ADP-ribose) polymerase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein stum homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      94704074..94759097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006250416.5 → XP_006250478.1  protein stum homolog

      See identical proteins and their annotated locations for XP_006250478.1

      UniProtKB/TrEMBL
      A6JGH0, D4A4F9
      Related
      ENSRNOP00000107824.1, ENSRNOT00000172569.1
      Conserved Domains (1) summary
      pfam15795
      Location:44 → 127
      Spec3; Ectodermal ciliogenesis protein
    Nucleotide Protein Strain
    Heading Accession and Version

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