U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ccdc159 coiled-coil domain containing 159 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300442, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ccdc159provided by RGD
    Official Full Name
    coiled-coil domain containing 159provided by RGD
    Primary source
    RGD:1308031
    See related
    EnsemblRapid:ENSRNOG00000011799 AllianceGenome:RGD:1308031
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308031
    Summary
    Predicted to be involved in spermatid development. Predicted to be located in sperm head-tail coupling apparatus. Orthologous to human CCDC159 (coiled-coil domain containing 159). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 83.2), Adrenal (RPKM 36.6) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ccdc159 in Genome Data Viewer
    Location:
    8q13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (28733988..28742646)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (20457905..20467232)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (22937962..22946648)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene RAB3D, member RAS oncogene family Neighboring gene transmembrane protein 205 Neighboring gene phospholipid phosphatase related 2 Neighboring gene SWIM-type zinc finger 7 associated protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC109537

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in spermatid development IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in spermatid development ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in sperm head-tail coupling apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in sperm head-tail coupling apparatus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coiled-coil domain-containing protein 159

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001371565.1 → NP_001358494.1  coiled-coil domain-containing protein 159

      Status: VALIDATED

      Source sequence(s)
      BC088314, JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A0G2JTP2, A6JNW0
      Related
      ENSRNOP00000068788.3, ENSRNOT00000088255.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      28733988..28742646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242678.5 → XP_006242740.1  coiled-coil domain-containing protein 159 isoform X1

      See identical proteins and their annotated locations for XP_006242740.1

      Conserved Domains (1) summary
      COG0419
      Location:146 → 313
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    2. XM_006242680.5 → XP_006242742.1  coiled-coil domain-containing protein 159 isoform X3

      See identical proteins and their annotated locations for XP_006242742.1

      UniProtKB/TrEMBL
      F7FD89
      Conserved Domains (1) summary
      COG0419
      Location:136 → 303
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    3. XM_063265048.1 → XP_063121118.1  coiled-coil domain-containing protein 159 isoform X6

    4. XM_006242679.5 → XP_006242741.1  coiled-coil domain-containing protein 159 isoform X2

      See identical proteins and their annotated locations for XP_006242741.1

      Related
      ENSRNOP00000040215.5, ENSRNOT00000049993.5
      Conserved Domains (1) summary
      COG0419
      Location:145 → 312
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    5. XM_063265047.1 → XP_063121117.1  coiled-coil domain-containing protein 159 isoform X5

      Related
      ENSRNOP00000104118.1, ENSRNOT00000159553.1

    6. XM_006242681.5 → XP_006242743.1  coiled-coil domain-containing protein 159 isoform X4

      See identical proteins and their annotated locations for XP_006242743.1

      Conserved Domains (1) summary
      COG0419
      Location:135 → 302
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    7. XM_063265049.1 → XP_063121119.1  coiled-coil domain-containing protein 159 isoform X7

      Related
      ENSRNOP00000101495.1, ENSRNOT00000153865.1

    8. XM_063265051.1 → XP_063121121.1  coiled-coil domain-containing protein 159 isoform X12

      UniProtKB/TrEMBL
      A0A8I6A3K5
      Related
      ENSRNOP00000087027.1, ENSRNOT00000120153.2

    9. XM_039081007.2 → XP_038936935.1  coiled-coil domain-containing protein 159 isoform X10

    10. XM_063265050.1 → XP_063121120.1  coiled-coil domain-containing protein 159 isoform X11

    11. XM_006242686.5 → XP_006242748.1  coiled-coil domain-containing protein 159 isoform X9

      See identical proteins and their annotated locations for XP_006242748.1

    12. XM_039081006.2 → XP_038936934.1  coiled-coil domain-containing protein 159 isoform X8

    13. XM_039081005.2 → XP_038936933.1  coiled-coil domain-containing protein 159 isoform X8

    14. XM_063265052.1 → XP_063121122.1  coiled-coil domain-containing protein 159 isoform X13

      UniProtKB/TrEMBL
      Q5M816

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001009667.1: Suppressed sequence

      Description
      NM_001009667.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from mouse, laboratory: Ccdc159 (GeneID:67119).
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools