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    Smim13 small integral membrane protein 13 [ Mus musculus (house mouse) ]

    Gene ID: 108934, updated on 9-Dec-2024

    Summary

    Official Symbol
    Smim13provided by MGI
    Official Full Name
    small integral membrane protein 13provided by MGI
    Primary source
    MGI:MGI:2652854
    See related
    Ensembl:ENSMUSG00000091264 AllianceGenome:MGI:2652854
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2900036K02Rik
    Summary
    Predicted to be located in membrane. Orthologous to human SMIM13 (small integral membrane protein 13). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in cortex adult (RPKM 30.7), frontal lobe adult (RPKM 26.9) and 24 other tissues See more
    Orthologs
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    Genomic context

    See Smim13 in Genome Data Viewer
    Location:
    13 A3.3; 13 20.41 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (41403320..41430053)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (41249844..41276577)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5387 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:41344998-41345107 Neighboring gene ribosomal protein S17, pseudogene 1 Neighboring gene predicted gene, 32063 Neighboring gene STARR-positive B cell enhancer mm9_chr13:41398120-41398421 Neighboring gene neural precursor cell expressed, developmentally down-regulated gene 9 Neighboring gene STARR-positive B cell enhancer ABC_E9875 Neighboring gene predicted gene, 32448 Neighboring gene STARR-seq mESC enhancer starr_34303 Neighboring gene STARR-positive B cell enhancer ABC_E2404 Neighboring gene predicted gene, 32401 Neighboring gene predicted gene, 32184

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 13
    Names
    UPF0766 protein C6orf228 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135577.2NP_001129049.1  small integral membrane protein 13

      See identical proteins and their annotated locations for NP_001129049.1

      Status: VALIDATED

      Source sequence(s)
      BC066054, BC094222, BE949208, CK781484
      Consensus CDS
      CCDS49246.1
      UniProtKB/Swiss-Prot
      E9Q942
      Related
      ENSMUSP00000130956.3, ENSMUST00000165561.4
      Conserved Domains (1) summary
      pfam15938
      Location:152
      DUF4750; Domain of unknown function (DUF4750)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      41403320..41430053
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)