Naa38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Naa38provided by MGI
Official Full Name: N(alpha)-acetyltransferase 38, NatC auxiliary subunitprovided by MGI
Primary source: MGI:MGI:1925554
See related: Ensembl:ENSMUSG00000059278 AllianceGenome:MGI:1925554
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Lsmd1; 1500034E06Rik
Summary: Predicted to enable RNA binding activity. Predicted to be involved in negative regulation of apoptotic process. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of NatC complex. Is expressed in cerebral cortex ventricular layer. Orthologous to human NAA38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Ubiquitous expression in testis adult (RPKM 129.8), ovary adult (RPKM 75.0) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 11 B3; 11 42.59 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	11	NC_000077.7 (69286617..69287497)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	11	NC_000077.6 (69395791..69396671)

Chromosome 11 - NC_000077.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in negative regulation of apoptotic process	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of apoptotic process	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
part_of NatC complex	ISO Inferred from Sequence Orthology more info
part_of NatC complex	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: N(alpha)-acetyltransferase 38, NatC auxiliary subunit

Names: LSM domain containing 1; LSM domain-containing protein 1; MAK31-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.