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    Bivm basic, immunoglobulin-like variable motif containing [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102548228, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Bivmprovided by RGD
    Official Full Name
    basic, immunoglobulin-like variable motif containingprovided by RGD
    Primary source
    RGD:1311888
    See related
    EnsemblRapid:ENSRNOG00000022894 AllianceGenome:RGD:1311888
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable DNA endonuclease activity and single-stranded DNA binding activity. Predicted to be active in nucleus. Orthologous to human BIVM (basic, immunoglobulin-like variable motif containing). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 87.0), Adrenal (RPKM 78.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Bivm in Genome Data Viewer
    Location:
    9q22
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (53760885..53797125)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (46268758..46305038)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (50884888..50921133)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 168 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene ERCC excision repair 5, endonuclease Neighboring gene methyltransferase like 21C-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Shotgun proteomics reveals specific modulated protein patterns in tears of patients with primary open angle glaucoma naïve to therapy. Pieragostino D, et al. Mol Biosyst, 2013 Jun. PMID 23580065
    2. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables single-stranded DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    basic immunoglobulin-like variable motif-containing protein
    Names
    rCG22223-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305447.1 → NP_001292376.1  basic immunoglobulin-like variable motif-containing protein

      See identical proteins and their annotated locations for NP_001292376.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6INS5, D4A204
      Related
      ENSRNOP00000033781.6, ENSRNOT00000033133.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      53760885..53797125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006244874.5 → XP_006244936.1  basic immunoglobulin-like variable motif-containing protein isoform X2

      See identical proteins and their annotated locations for XP_006244936.1

      UniProtKB/TrEMBL
      A6INS5, D4A204

    2. XM_017596228.3 → XP_017451717.1  basic immunoglobulin-like variable motif-containing protein isoform X2

      UniProtKB/TrEMBL
      A6INS5, D4A204

    3. XM_006244881.5 → XP_006244943.2  basic immunoglobulin-like variable motif-containing protein isoform X1

    4. XM_039082902.2 → XP_038938830.1  basic immunoglobulin-like variable motif-containing protein isoform X3

    5. XM_039082901.2 → XP_038938829.1  basic immunoglobulin-like variable motif-containing protein isoform X2

      UniProtKB/TrEMBL
      A6INS5, D4A204

    6. XM_006244876.2 → XP_006244938.1  basic immunoglobulin-like variable motif-containing protein isoform X2

      See identical proteins and their annotated locations for XP_006244938.1

      UniProtKB/TrEMBL
      A6INS5, D4A204

    7. XM_008767063.4 → XP_008765285.1  basic immunoglobulin-like variable motif-containing protein isoform X4

      See identical proteins and their annotated locations for XP_008765285.1

    RNA

    1. XR_005488841.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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