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    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818552, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
    Primary source
    TAIR:AT2G39690
    Locus tag
    AT2G39690
    See related
    Araport:AT2G39690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17A14.6; F17A14_6
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (16540927..16543411)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Radical SAM superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene expansin A4 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036438.1
    NM_001336785.1
    NM_001336789.1
    NM_001336790.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
    NP_001031515.1
    • Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G12540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001318384.1
    • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G12540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16540927..16543411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336786.1 → NP_001324845.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1B7

    2. NM_001336787.1 → NP_001324847.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLT5, A0A1P8B1C4, A0A384L4Z6, A0A7G2EHS7

    3. NM_001336788.1 → NP_001324848.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1C9, A0A5S9X5M1, A0A654F0B9
      Conserved Domains (2) summary
      pfam04784
      Location:322 → 444
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:15 → 95
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    4. NM_001336791.1 → NP_001324849.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNC5, A0A1P8B1F3, A0A384KTC2, A0A7G2EIN2

    5. NM_001336785.1 → NP_001318384.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F0B9, F4IVY7

    6. NM_001336789.1 → NP_001324850.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1C8, A0A654F0B9

    7. NM_001336790.1 → NP_001324846.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1C1, A0A654F0B9

    8. NM_001036438.1 → NP_001031515.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031515.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O48817, Q6DSR8
      Conserved Domains (1) summary
      pfam04784
      Location:209 → 337
      DUF547; Protein of unknown function, DUF547
    Nucleotide Protein
    Heading Accession and Version

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