S-locus lectin protein kinase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: S-locus lectin protein kinase family protein
Primary source: TAIR:AT1G61490
Locus tag: AT1G61490
See related: Araport:AT1G61490
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T1F9.1; T1F9_1
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 10

Sequence:: Chromosome: 1; NC_003070.9 (22684894..22689611, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables calmodulin binding	ISS Inferred from Sequence or Structural Similarity more info
enables protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info
enables protein serine/threonine kinase activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
involved_in recognition of pollen	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: S-locus lectin protein kinase family protein

NP_176344.1

S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G61480.1); Has 122080 Blast hits to 120389 proteins in 4654 species: Archae - 108; Bacteria - 13580; Metazoa - 45068; Fungi - 10155; Plants - 34969; Viruses - 418; Other Eukaryotes - 17782 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

22684894..22689611 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_104830.2 → NP_176344.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_176344.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O64770

UniProtKB/TrEMBL

A0A5S9WR75

Conserved Domains (7) summary

smart00219
Location:491 → 761

TyrKc; Tyrosine kinase, catalytic domain

smart00108
Location:30 → 146

B_lectin; Bulb-type mannose-specific lectin

cd00028
Location:31 → 147

B_lectin; Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically ...

cd01098
Location:329 → 414

PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...

pfam11883
Location:762 → 804

DUF3403; Domain of unknown function (DUF3403)

cd14066
Location:496 → 762

STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

pfam00954
Location:205 → 312

S_locus_glycop; S-locus glycoprotein domain
NM_001333976.1 → NP_001322953.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WK46, A0A1P8AVL2
NM_001333975.1 → NP_001322952.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

O64770

UniProtKB/TrEMBL

A0A5S9WR75
NM_001333978.1 → NP_001322951.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

O64770

UniProtKB/TrEMBL

A0A5S9WR75
NM_001333979.1 → NP_001322954.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AVJ2, A0A5S9WR75
NM_001333977.1 → NP_001322955.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

O64770

UniProtKB/TrEMBL

A0A5S9WR75
NM_001333980.1 → NP_001322950.1 S-locus lectin protein kinase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AVJ2, A0A5S9WR75