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    ATG18H autophagy 18h-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841912, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATG18H
    Official Full Name
    autophagy 18h-like protein
    Primary source
    TAIR:AT1G54710
    Locus tag
    AT1G54710
    See related
    Araport:AT1G54710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATATG18H; homolog of yeast autophagy 18 (ATG18) H; T22H22.14; T22H22_14
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    Genomic context

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    See ATG18H in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (20416770..20421156, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene gamma histone Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene early-responsive to dehydration protein-related / ERD protein-like protein Neighboring gene Major facilitator superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtATG18a is required for the formation of autophagosomes during nutrient stress and senescence in Arabidopsis thaliana. Xiong Y, et al. Plant J, 2005 May. PMID 15860012
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333664.1
    NM_104346.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    autophagy 18h-like protein
    NP_564664.1
    • homolog of yeast autophagy 18 (ATG18) H (ATG18H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 852 Blast hits to 850 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 369; Fungi - 255; Plants - 157; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20416770..20421156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104346.3 → NP_564664.1  autophagy 18h-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564664.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1Q5, Q9C5I7, Q9ZVM1
      UniProtKB/TrEMBL
      A0A178W703, A0A5S9WLW2, A0A654EIG3
      Conserved Domains (3) summary
      sd00039
      Location:385 → 439
      7WD40; WD40 repeat [structural motif]
      pfam12490
      Location:517 → 729
      BCAS3; Breast carcinoma amplified sequence 3
      cl29593
      Location:332 → 410
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. NM_001333664.1 → NP_001323099.1  autophagy 18h-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW11, A0A5S9WLW2, A0A654EIG3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1Q5.1

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