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    Ta11-like non-LTR retrotransposon [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815836, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ta11-like non-LTR retrotransposon
    Primary source
    TAIR:AT2G13500
    Locus tag
    AT2G13500
    See related
    Araport:AT2G13500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10F5.4; T10F5_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (5627936..5629099)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126932.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ta11-like non-LTR retrotransposon
    NP_178976.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41590.1); Has 126 Blast hits to 126 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      5627936..5629099
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126932.1 → NP_178976.1  Ta11-like non-LTR retrotransposon [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178976.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNI0, Q9SIU4
      Conserved Domains (2) summary
      pfam14111
      Location:30 → 170
      DUF4283; Domain of unknown function (DUF4283)
      pfam14392
      Location:172 → 218
      zf-CCHC_4; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version

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