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    Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818604, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT2G40130
    Locus tag
    AT2G40130
    See related
    Araport:AT2G40130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SMAX1-like 8; SMXL8; T7M7.2; T7M7_2
    Summary
    Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (16765709..16769279)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Phosphoinositide-specific phospholipase C family protein Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene zinc finger (CCCH-type) family protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 28

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis. Li W, et al. Biomolecules, 2020 Apr 14. PMID 32295207, Free PMC Article
    2. SUPPRESSOR OF MAX2 LIKE 6, 7, and 8 Interact with DDB1 BINDING WD REPEAT DOMAIN HYPERSENSITIVE TO ABA DEFICIENT 1 to Regulate the Drought Tolerance and Target SUCROSE NONFERMENTING 1 RELATED PROTEIN KINASE 2.3 to Abscisic Acid Response in Arabidopsis. Lian Y, et al. Biomolecules, 2023 Sep 18. PMID 37759806, Free PMC Article
    3. Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation. Wang L, et al. Plant Cell, 2015 Nov. PMID 26546446, Free PMC Article
    4. SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and seedling development in Arabidopsis. Stanga JP, et al. Plant Physiol, 2013 Sep. PMID 23893171, Free PMC Article
    5. SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis. Soundappan I, et al. Plant Cell, 2015 Nov. PMID 26546447, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
      Title: Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
    2. In Arabidopsis, D53-like SMXLs act with TPR2 to repress transcription and so allow lateral bud outgrowth but that strigolactone-induced degradation of D53-like proteins activates transcription to inhibit outgrowth. [SMLX8]
      Title: Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.
    3. Data suggests that SMAX1 and SMXL6,7,8 repress karrikin and strigolactone signaling, respectively, and that all MAX2-dependent growth effects are mediated by degradation of SMAX1/SMXL proteins.[SMXL8]
      Title: SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001336824.1
    NM_201917.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to strigolactone IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to water deprivation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
    NP_001318388.1
    • Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 212 Blast hits to 210 proteins in 27 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 2; Plants - 199; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_973646.1
    • Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-2 (InterPro:IPR013093); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16765709..16769279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336824.1 → NP_001318388.1  Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTS2, A0A2H1ZE49, A0A384LHW8, A0A5S9X5N2
      Conserved Domains (1) summary
      cd19499
      Location:533 → 688
      RecA-like_ClpB_Hsp104-like; Chaperone protein ClpB/Hsp104 subfamily

    2. NM_201917.1 → NP_973646.1  Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973646.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IGZ2, Q940S4, Q9XEE5
      UniProtKB/TrEMBL
      A0A5S9X5N2
      Conserved Domains (1) summary
      cd19499
      Location:536 → 691
      RecA-like_ClpB_Hsp104-like; Chaperone protein ClpB/Hsp104 subfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IGZ2.1

    Gene LinkOut

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