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    naphthalene 1,2-dioxygenase subunit alpha (DUF1264) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837053, updated on 18-Sep-2024

    Summary

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    Official Full Name
    naphthalene 1,2-dioxygenase subunit alpha (DUF1264)
    Primary source
    TAIR:AT1G05510
    Locus tag
    AT1G05510
    See related
    Araport:AT1G05510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    OBAP1a; Oil Body-Associated Protein 1a; T25N20.16
    Summary
    Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (1629446..1630863)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene chromatin remodeling 31 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene Sec23/Sec24 protein transport family protein Neighboring gene UDP-glucosyl transferase 75B2 Neighboring gene hypothetical protein (DUF295)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The evolutionary conserved oil body associated protein OBAP1 participates in the regulation of oil body size. López-Ribera I, et al. Plant Physiol, 2014 Mar. PMID 24406791, Free PMC Article
    2. Protein tyrosine kinases and protein tyrosine phosphatases are involved in abscisic acid-dependent processes in Arabidopsis seeds and suspension cells. Ghelis T, et al. Plant Physiol, 2008 Nov. PMID 18768909, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Oil Body Associated Protein1 (OBAP1) is necessary to maintain the structure of the oil bodies and for seed germination in Arabidopsis.[OBAP1a]
      Title: The evolutionary conserved oil body associated protein OBAP1 participates in the regulation of oil body size.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100430.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within lipid storage IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within seed oilbody biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lipid droplet IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    naphthalene 1,2-dioxygenase subunit alpha (DUF1264)
    NP_172042.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1264 (InterPro:IPR010686); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1264) (TAIR:AT2G31985.1); Has 295 Blast hits to 295 proteins in 126 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 67; Plants - 102; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1629446..1630863
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100430.5 → NP_172042.1  naphthalene 1,2-dioxygenase subunit alpha (DUF1264) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172042.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVY7
      UniProtKB/TrEMBL
      A0A178WID0, A0A5S9SSN7
      Conserved Domains (1) summary
      pfam06884
      Location:37 → 202
      DUF1264; Protein of unknown function (DUF1264)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVY7.1

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