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    CalS7 glucan synthase-like 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837160, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CalS7
    Official Full Name
    glucan synthase-like 7
    Primary source
    TAIR:AT1G06490
    Locus tag
    AT1G06490
    See related
    Araport:AT1G06490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana glucan synthase-like 7; ATGSL07; atgsl7; callose synthase 7; F12K11.17; F12K11_17; glucan synthase-like 7; gsl07; GSL07; GSL7
    Summary
    Encodes Callose Synthase 7 (CalS7), a phloem-specific callose synthase responsible for callose deposition in developing sieve elements during phloem formation and in mature phloem induced by wounding.
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    Genomic context

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    See CalS7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    41
    Sequence:
    Chromosome: 1; NC_003070.9 (1978378..1989409)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Ile Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF3317) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative pectate lyase PLL12 and callose deposition through polar CALS7 are necessary for long-distance phloem transport in Arabidopsis. Kalmbach L, et al. Curr Biol, 2023 Mar 13. PMID 36805125
    2. CalS7 encodes a callose synthase responsible for callose deposition in the phloem. Xie B, et al. Plant J, 2011 Jan. PMID 21175885
    3. Callose synthase GSL7 is necessary for normal phloem transport and inflorescence growth in Arabidopsis. Barratt DH, et al. Plant Physiol, 2011 Jan. PMID 21098675, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Putative pectate lyase PLL12 and callose deposition through polar CALS7 are necessary for long-distance phloem transport in Arabidopsis.
      Title: Putative pectate lyase PLL12 and callose deposition through polar CALS7 are necessary for long-distance phloem transport in Arabidopsis.
    2. GSL7 is expressed in the phloem and is necessary for callose synthesis in the sieve plate. [GSL7]
      Title: Callose synthase GSL7 is necessary for normal phloem transport and inflorescence growth in Arabidopsis.
    3. CalS7 is a phloem-specific callose synthase gene, and is responsible for callose deposition in developing sieve elements during phloem formation and in mature phloem induced by wounding. [CalS7]
      Title: CalS7 encodes a callose synthase responsible for callose deposition in the phloem.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    NM_100528.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 1,3-beta-D-glucan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 1,3-beta-D-glucan synthase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables 1,3-beta-D-glucan synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in (1->3)-beta-D-glucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within callose deposition in phloem sieve plate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within phloem transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 1,3-beta-D-glucan synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glucan synthase-like 7
    NP_172136.2
    • glucan synthase-like 7 (GSL07); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 11 (TAIR:AT3G59100.1); Has 1279 Blast hits to 924 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 9; Fungi - 711; Plants - 489; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1978378..1989409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331632.1 → NP_001322002.1  glucan synthase-like 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7B8, A0A384L982, A0A7G2DRM5, E9KSP0
      Conserved Domains (3) summary
      pfam02364
      Location:1049 → 1792
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:63 → 185
      Vta1; Vta1 like
      pfam14288
      Location:350 → 450
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

    2. NM_100528.3 → NP_172136.2  glucan synthase-like 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172136.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SHJ3
      UniProtKB/TrEMBL
      A0A7G2DRM5
      Conserved Domains (3) summary
      pfam02364
      Location:1049 → 1792
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:63 → 185
      Vta1; Vta1 like
      pfam14288
      Location:350 → 450
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHJ3.3

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