U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Agenet and bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843187, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Agenet and bromo-adjacent homology (BAH) domain-containing protein
    Primary source
    TAIR:AT1G68580
    Locus tag
    AT1G68580
    See related
    Araport:AT1G68580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J5.18; F24J5_18
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (25752624..25756113)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein PSRP-3/Ycf65 Neighboring gene aluminum activated malate transporter family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001334369.1
    NM_001334372.1
    NM_105529.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Agenet and bromo-adjacent homology (BAH) domain-containing protein
    NP_001319349.1
    • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 202 Blast hits to 186 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_177025.2
    • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 284 Blast hits to 251 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25752624..25756113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334370.1 → NP_001321496.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR30, A0A5S9WSZ6
      Conserved Domains (3) summary
      cd04721
      Location:48 → 175
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      cd20403
      Location:359 → 404
      Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cd20405
      Location:267 → 325
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    2. NM_001334371.1 → NP_001321498.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR80, A0A7G2E489
      Conserved Domains (3) summary
      cd04721
      Location:144 → 271
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      cd20403
      Location:455 → 500
      Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cd20405
      Location:363 → 421
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    3. NM_105529.4 → NP_177025.2  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177025.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W262, A0A5S9WSZ6, Q8L7Q0
      Conserved Domains (3) summary
      cd04721
      Location:144 → 271
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      cd20403
      Location:455 → 500
      Tudor_Agenet_FMRP-like_rpt2; second Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cd20405
      Location:363 → 421
      Tudor_Agenet_AtDUF_rpt1_3; first and third Tudor-like Agenet domains found in a family of Arabidopsis thaliana DUF724 domain-containing proteins (AtDUFs)

    4. NM_001334372.1 → NP_001321497.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR23, A0A5S9WSZ6

    5. NM_001334369.1 → NP_001319349.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E489, F4HXB8
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.