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    cysteine-rich/transmembrane domain protein B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842057, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cysteine-rich/transmembrane domain protein B
    Primary source
    TAIR:AT1G56060
    Locus tag
    AT1G56060
    See related
    Araport:AT1G56060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6H22.17; T6H22_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (20966528..20967180, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L41 family Neighboring gene GTP-binding protein-like protein Neighboring gene Ribosomal protein S5/Elongation factor G/III/V family protein Neighboring gene interactor of constitutive active ROPs protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CYSTM3 negatively regulates salt stress tolerance in Arabidopsis. Xu Y, et al. Plant Mol Biol, 2019 Mar. PMID 30701352
    2. CYSTM, a Novel Non-Secreted Cysteine-Rich Peptide Family, Involved in Environmental Stresses in Arabidopsis thaliana. Xu Y, et al. Plant Cell Physiol, 2018 Feb 1. PMID 29272523
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001333758.1
    NM_104484.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich/transmembrane domain protein B
    NP_001319250.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 180 Blast hits to 180 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20966528..20967180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333758.1 → NP_001319250.1  cysteine-rich/transmembrane domain protein B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I3J1

    2. NM_104484.3 → NP_176002.1  cysteine-rich/transmembrane domain protein B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176002.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178WF56, A0A1P8ANL9
      UniProtKB/TrEMBL
      A0A384KK78
      Conserved Domains (1) summary
      pfam12734
      Location:36 → 71
      CYSTM; Cysteine-rich TM module stress tolerance
    Nucleotide Protein
    Heading Accession and Version

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