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    PLIM2b GATA type zinc finger transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839267, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLIM2b
    Official Full Name
    GATA type zinc finger transcription factor family protein
    Primary source
    TAIR:AT1G01780
    Locus tag
    AT1G01780
    See related
    Araport:AT1G01780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N6.19; T1N6_19
    Summary
    Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.
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    Genomic context

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    See PLIM2b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (282761..284245)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene actin depolymerizing factor 11 Neighboring gene denosine deaminases acting on tRNA Neighboring gene ncRNA Neighboring gene propionyl-CoA carboxylase Neighboring gene K+ efflux antiporter 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns and modes of regulation. Papuga J, et al. Plant Cell, 2010 Sep. PMID 20817848, Free PMC Article
    2. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100061.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament bundle assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with actin cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA type zinc finger transcription factor family protein
    NP_171683.1
    • GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1); Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 4032; Fungi - 22; Plants - 446; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      282761..284245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100061.3 → NP_171683.1  GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171683.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1ECF5, Q9LQ78
      UniProtKB/TrEMBL
      A0A178WGL7, A0A5S9S578
      Conserved Domains (2) summary
      cd09440
      Location:6 → 68
      LIM1_SF3; The first Lim domain of pollen specific protein SF3
      cl02475
      Location:104 → 164
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1ECF5.1

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