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    RABC2b RAB GTPase homolog C2B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820149, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RABC2b
    Official Full Name
    RAB GTPase homolog C2B
    Primary source
    TAIR:AT3G09910
    Locus tag
    AT3G09910
    See related
    Araport:AT3G09910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRAB18C; ATRABC2B; RAB GTPase homolog C2B
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    Genomic context

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    See RABC2b in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (3036611..3038502, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene Ankyrin repeat family protein Neighboring gene RAB GTPase homolog E1E Neighboring gene miscRNA Neighboring gene phosphatidyl inositol monophosphate 5 kinase Neighboring gene induced by phosphate starvation1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CHARACTERIZATION OF A RABE (RAS GENE FROM RAT BRAIN E) GTPASE EXPRESSED DURING MORPHOGENESIS IN THE UNICELLULAR GREEN ALGA MICRASTERIAS DENTICULATA (ZYGNEMATOPHYCEAE, STREPTOPHYTA)(1). Vannerum K, et al. J Phycol, 2012 Jun. PMID 27011085
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202921.2
    NM_001202922.1
    NM_001337848.1
    NM_001337849.1
    NM_111826.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RAB GTPase homolog C2B
    NP_001189850.1
    • RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1).
    NP_001189851.1
    • RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1).
    NP_187602.1
    • RAB GTPase homolog C2B (RABC2b); FUNCTIONS IN: GTP binding, transcription factor binding, ATP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: sepal, root, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras (InterPro:IPR013753), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 29365 Blast hits to 29334 proteins in 746 species: Archae - 15; Bacteria - 117; Metazoa - 15214; Fungi - 4279; Plants - 3567; Viruses - 20; Other Eukaryotes - 6153 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3036611..3038502 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111826.4 → NP_187602.1  RAB GTPase homolog C2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187602.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SF92
      UniProtKB/TrEMBL
      A0A178V665, A0A5S9XB92, A0A7G2EH56
      Conserved Domains (1) summary
      PLN03118
      Location:1 → 204
      PLN03118; Rab family protein; Provisional

    2. NM_001202921.2 → NP_001189850.1  RAB GTPase homolog C2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189850.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SF92
      UniProtKB/TrEMBL
      A0A178V665, A0A5S9XB92, A0A7G2EH56
      Conserved Domains (1) summary
      PLN03118
      Location:1 → 204
      PLN03118; Rab family protein; Provisional

    3. NM_001337848.1 → NP_001326433.1  RAB GTPase homolog C2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP95, A0A7G2EH56

    4. NM_001337849.1 → NP_001326432.1  RAB GTPase homolog C2B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP95, A0A7G2EH56

    5. NM_001202922.1 → NP_001189851.1  RAB GTPase homolog C2B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189851.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SF92
      UniProtKB/TrEMBL
      A0A178V665, A0A5S9XB92, A0A7G2EH56
      Conserved Domains (1) summary
      PLN03118
      Location:1 → 204
      PLN03118; Rab family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SF92.1

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