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    Class I peptide chain release factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840227, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Class I peptide chain release factor
    Primary source
    TAIR:AT1G33330
    Locus tag
    AT1G33330
    See related
    Araport:AT1G33330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10C21.2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (12084914..12086883)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene ncRNA Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333036.1
    NM_001333037.1
    NM_103060.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables translation release factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translational termination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Class I peptide chain release factor
    NP_001319132.1
    • Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 2 (TAIR:AT1G56350.1); Has 14711 Blast hits to 14711 proteins in 2768 species: Archae - 0; Bacteria - 10081; Metazoa - 256; Fungi - 228; Plants - 204; Viruses - 13; Other Eukaryotes - 3929 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12084914..12086883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333036.1 → NP_001319132.1  Class I peptide chain release factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9C815, Q9C875
      Conserved Domains (1) summary
      pfam00472
      Location:91 → 168
      RF-1; RF-1 domain

    2. NM_001333037.1 → NP_001320386.1  Class I peptide chain release factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9C815, Q9C875
      Conserved Domains (1) summary
      pfam00472
      Location:91 → 168
      RF-1; RF-1 domain

    3. NM_103060.3 → NP_174601.2  Class I peptide chain release factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174601.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9C815, Q9C875
      Conserved Domains (1) summary
      pfam00472
      Location:91 → 168
      RF-1; RF-1 domain
    Nucleotide Protein
    Heading Accession and Version

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