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    copper ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825888, updated on 18-Sep-2024

    Summary

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    Official Full Name
    copper ion binding protein
    Primary source
    TAIR:AT4G05400
    Locus tag
    AT4G05400
    See related
    Araport:AT4G05400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    C6L9.80; C6L9_80
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (2741124..2742949)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop nucleoside triphosphate hydrolase superfamily protein Neighboring gene root FNR 1 Neighboring gene ncRNA Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene damaged DNA binding protein 1A Neighboring gene Carbohydrate-binding X8 domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036509.2
    NM_001340551.1
    NM_116779.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding HDA PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of mitochondrial large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    copper ion binding protein
    NP_001031586.1
    • copper ion binding; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_192449.1
    • copper ion binding; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 54 Blast hits to 54 proteins in 22 species: Archae - 8; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2741124..2742949
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036509.2 → NP_001031586.1  copper ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031586.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V220, A0A384LFU6, Q9M0V5
      Conserved Domains (1) summary
      COG2511
      Location:135 → 230
      GatE; Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal structure and biogenesis]

    2. NM_001340551.1 → NP_001329026.1  copper ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V220, A0A384LFU6, Q9M0V5
      Conserved Domains (1) summary
      COG2511
      Location:135 → 230
      GatE; Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal structure and biogenesis]

    3. NM_116779.3 → NP_192449.1  copper ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192449.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V220, A0A384LFU6, Q9M0V5
      Conserved Domains (1) summary
      COG2511
      Location:135 → 230
      GatE; Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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