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    SEC1B Sec1/munc18-like (SM) proteins superfamily [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826820, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SEC1B
    Official Full Name
    Sec1/munc18-like (SM) proteins superfamily
    Primary source
    TAIR:AT4G12120
    Locus tag
    AT4G12120
    See related
    Araport:AT4G12120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSEC1B; F16J13.190; F16J13_190
    Summary
    member of KEULE Gene Family
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    Genomic context

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    See SEC1B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    21
    Sequence:
    Chromosome: 4; NC_003075.7 (7256522..7261180, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene sterol-4alpha-methyl oxidase 1-1 Neighboring gene tRNA-Lys Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Glycine cleavage T-protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117282.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sec1/munc18-like (SM) proteins superfamily
    NP_567388.1
    • SEC1B; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7256522..7261180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117282.3 → NP_567388.1  Sec1/munc18-like (SM) proteins superfamily [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567388.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZ77
      UniProtKB/TrEMBL
      A0A654FNL5
      Conserved Domains (1) summary
      pfam00995
      Location:44 → 438
      Sec1; Sec1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZ77.3

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