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    endonuclease/exonuclease/phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829761, updated on 18-Sep-2024

    Summary

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    Official Full Name
    endonuclease/exonuclease/phosphatase family protein
    Primary source
    TAIR:AT4G36050
    Locus tag
    AT4G36050
    See related
    Araport:AT4G36050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19K4.180; T19K4_180
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (17051911..17055192, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene armadillo repeat only 3 Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene ncRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene calcium-dependent protein kinase 18 Neighboring gene phosphotransferases/inositol or phosphatidylinositol kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. APURINIC/APYRIMIDINIC ENDONUCLEASE2 and ZINC FINGER DNA 3'-PHOSPHOESTERASE Play Overlapping Roles in the Maintenance of Epigenome and Genome Stability. Li J, et al. Plant Cell, 2018 Sep. PMID 30135084, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001342397.1
    NM_001342398.1
    NM_001342399.1
    NM_119772.3
    NM_202962.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables polynucleotide 3'-phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    endonuclease/exonuclease/phosphatase family protein
    NP_195329.2
    • endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: zinc ion binding, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808), Zinc finger, GRF-type (InterPro:IPR010666); Has 2122 Blast hits to 1069 proteins in 229 species: Archae - 0; Bacteria - 153; Metazoa - 440; Fungi - 325; Plants - 79; Viruses - 2; Other Eukaryotes - 1123 (source: NCBI BLink).
    NP_974691.2
    • endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: zinc ion binding, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 8559 Blast hits to 7505 proteins in 2283 species: Archae - 114; Bacteria - 4844; Metazoa - 586; Fungi - 501; Plants - 129; Viruses - 2; Other Eukaryotes - 2383 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17051911..17055192 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119772.3 → NP_195329.2  endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195329.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      B2CJ88
      Conserved Domains (2) summary
      pfam06839
      Location:353 → 404
      zf-GRF; GRF zinc finger
      cl00490
      Location:3 → 130
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. NM_001342397.1 → NP_001328802.1  endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5S2, A0A654FVX8
      Conserved Domains (2) summary
      pfam06839
      Location:554 → 605
      zf-GRF; GRF zinc finger
      cl00490
      Location:2 → 331
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    3. NM_001342398.1 → NP_001328804.1  endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5S6, B2CJ88

    4. NM_202962.2 → NP_974691.2  endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974691.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z270, F4JNY0, O65642, Q8W4I0
      UniProtKB/TrEMBL
      A0A178UWE8
      Conserved Domains (2) summary
      pfam06839
      Location:554 → 588
      zf-GRF; GRF zinc finger
      cl00490
      Location:2 → 331
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    5. NM_001342399.1 → NP_001328803.1  endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UWE8, A0A1P8B5S9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JNY0.1

    Gene LinkOut

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