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    PIRL1 plant intracellular ras group-related LRR 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830470, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PIRL1
    Official Full Name
    plant intracellular ras group-related LRR 1
    Primary source
    TAIR:AT5G05850
    Locus tag
    AT5G05850
    See related
    Araport:AT5G05850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJJ3.27; MJJ3_27; plant intracellular ras group-related LRR 1
    Summary
    Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
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    Genomic context

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    See PIRL1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (1762405..1764774, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Nucleotide-sugar transporter family protein Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene replication factor C subunit, putative (DUF620) Neighboring gene UDP-glucosyl transferase 76C2 Neighboring gene UDP-glucosyl transferase 76C1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Effect of sporophytic PIRL9 genotype on post-meiotic expression of the Arabidopsis pirl1;pirl9 mutant pollen phenotype. Forsthoefel NR, et al. Planta, 2011 Feb. PMID 21140166
    2. PIRL1 and PIRL9, encoding members of a novel plant-specific family of leucine-rich repeat proteins, are essential for differentiation of microspores into pollen. Forsthoefel NR, et al. Planta, 2010 Oct. PMID 20697737
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PIRL1 and PIRL9 have redundant roles essential at a key transition point early in pollen development. [PIRL1]
      Title: PIRL1 and PIRL9, encoding members of a novel plant-specific family of leucine-rich repeat proteins, are essential for differentiation of microspores into pollen.
    Submit: New GeneRIF Correction

    General gene information

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    NM_120667.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within microgametogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in microgametogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in pollen development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant intracellular ras group-related LRR 1
    NP_196204.1
    • plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1762405..1764774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120667.5 → NP_196204.1  plant intracellular ras group-related LRR 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196204.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFJ3
      UniProtKB/TrEMBL
      A0A178UC02
      Conserved Domains (4) summary
      cd00116
      Location:212 → 403
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:208 → 228
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:366 → 408
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:366 → 426
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFJ3.1

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