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    lipase (DUF620) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830549, updated on 18-Sep-2024

    Summary

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    Official Full Name
    lipase (DUF620)
    Primary source
    TAIR:AT5G06610
    Locus tag
    AT5G06610
    See related
    Araport:AT5G06610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15M7.14; F15M7_14
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (2029793..2033723)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FAD-linked oxidases family protein Neighboring gene uncharacterized protein Neighboring gene ubiquitin-specific protease 12 Neighboring gene SET domain protein 38 Neighboring gene proline-rich extensin-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Rho-actin signaling pathway shapes cell wall boundaries in Arabidopsis xylem vessels. Sugiyama Y, et al. Nat Commun, 2019 Jan 28. PMID 30692538, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120744.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of plant-type cell wall cellulose biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within xylem vessel member cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    lipase (DUF620)
    NP_196279.1
    • Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT1G27690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2029793..2033723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120744.3 → NP_196279.1  lipase (DUF620) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196279.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FZE5, Q8L9E9, Q9FG09
      Conserved Domains (1) summary
      pfam04788
      Location:105 → 347
      DUF620; Protein of unknown function (DUF620)
    Nucleotide Protein
    Heading Accession and Version

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