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    GRP20 glycine-rich protein 20 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830649, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GRP20
    Official Full Name
    glycine-rich protein 20
    Primary source
    TAIR:AT5G07560
    Locus tag
    AT5G07560
    See related
    Araport:AT5G07560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGRP20; glycine-rich protein 20; T2I1.270; T2I1_270
    Summary
    Lipid-binding oleosins, glycine-rich protein.
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    Genomic context

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    See GRP20 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (2390207..2391439, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein 16 Neighboring gene glycine-rich protein 19 Neighboring gene glycine/proline-rich protein Neighboring gene Oleosin family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of micro- and small-exon retention and other splicing processes by GRP20 for flower development. Wang J, et al. Nat Plants, 2024 Jan. PMID 38195906, Free PMC Article
    2. Gene families from the Arabidopsis thaliana pollen coat proteome. Mayfield JA, et al. Science, 2001 Jun 29. PMID 11431566
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120838.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables mRNA CDS binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA splicing, via spliceosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in monolayer-surrounded lipid storage body IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of spliceosomal complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine-rich protein 20
    NP_196373.1
    • glycine-rich protein 20 (GRP20); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid storage, sexual reproduction; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: Oleosin family protein (TAIR:AT5G07571.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2390207..2391439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120838.4 → NP_196373.1  glycine-rich protein 20 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196373.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJU8, Q94FR2, Q9LY07
      Conserved Domains (1) summary
      pfam01277
      Location:44 → 111
      Oleosin
    Nucleotide Protein
    Heading Accession and Version

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